Program blastn blastp blastx tblastn tblastx Database NCBI nr (PEP) 02-08 NCBI nt (NT) 02-08 UniProt (protein) 02-06 PDB proteins 10-02 human genome (NT) 04-03 Aedes_aegypti scaffolds (NT) 07-06 Aedes_aegypti mRNA (NT) 07-065 Aedes_aegypti protein (PEP) 07-06 anopheles gambiae (NT) 04-03 anopheles gambiae (pep) 04-03 Apis mellifera scaffolds (NT) 05-06 Tribolium casteneum contigs (NT) 05-06 Bombyx mori (PEP) 05-06 EST others 02-03 rice japonica TIGR protein 07-03 rice japonica TIGR CDS 07-03 rice japonica TIGR contigs 07-03 rice indica BGI protein 09-02 Arab TIGR protein 05-03 Arab TIGR CDS & intron 07-02 Arab TIGR contigs 07-02 Arab TAIR intergenic 05-02 Arab RIKEN full-length cDNAs 10-02 Arab TIGR UTR_CDS 10-02 Brassica oleracea (TIGR 1x gen) 07-03 Physco PEP JGI 08-07 Hordeum vulgare NCBI NT 03-03 Chlamy unmasked 01-04 Thalassiosira pseud 10-04 Pramorum NT 04-04 Psojae NT 04-04 BarleyArray NT 02-03 Barley 31 Unigene NT 05-04 Barley 21 Unigene NT 02-05 Barley 32 Unigene NT 02-05 CITRUS C37 NT 03-06 CITRUS C38 NT 03-06 CITRUS SSR NT 12-05 CITRUS C41 UNIGENE NT 08-06 WHEAT_WK NT 01-05 AFFY_WHEAT NT 06-06
Enter sequence below in FASTA format Or load it from disk
Set subsequence: From To
Expect 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Other advanced options:
